gcs: add package for building and using Golomb-coded set filters
This commit is contained in:
Alex
Olaoluwa Osuntokun
parent
06f32abe07
commit
3069dcf175
7 changed files with 616 additions and 1 deletions
3
LICENSE
3
LICENSE
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ISC License
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Copyright (c) 2013-2016 The btcsuite developers
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Copyright (c) 2013-2017 The btcsuite developers
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Copyright (c) 2016-2017 The Lightning Network Developers
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Permission to use, copy, modify, and distribute this software for any
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purpose with or without fee is hereby granted, provided that the above
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24
gcs/README.md
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24
gcs/README.md
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base58
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==========
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[]
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(https://travis-ci.org/btcsuite/btcutil) [![ISC License]
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(http://img.shields.io/badge/license-ISC-blue.svg)](http://copyfree.org)
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[]
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(http://godoc.org/github.com/btcsuite/btcutil/gcs)
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Package gcs provides an API for building and using a Golomb-coded set filter
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similar to that described [here].(http://giovanni.bajo.it/post/47119962313/golomb-coded-sets-smaller-than-bloom-filters)
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A comprehensive suite of tests is provided to ensure proper functionality.
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## Installation and Updating
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```bash
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$ go get -u github.com/btcsuite/btcutil/gcs
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```
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## License
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Package gcs is licensed under the [copyfree](http://copyfree.org) ISC
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License.
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24
gcs/doc.go
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24
gcs/doc.go
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// Copyright (c) 2016-2017 The btcsuite developers
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// Copyright (c) 2016-2017 The Lightning Network Developers
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// Use of this source code is governed by an ISC
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// license that can be found in the LICENSE file.
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/*
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Package gcs provides an API for building and using a Golomb-coded set filter.
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Golomb-Coded Set
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A Golomb-coded set is a probabilistic data structure used similarly to a Bloom
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filter. A filter uses constant-size overhead plus on average n+2 bits per
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item added to the filter, where 2^-1 is the desired false positive (collision)
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probability.
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GCS use in Bitcoin
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GCS filters are a proposed mechanism for storing and transmitting per-block
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filters in Bitcoin. The usage is intended to be the inverse of Bloom filters:
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a full node would send an SPV node the GCS filter for a block, which the SPV
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node would check against its list of relevant items. The suggested collision
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probability for Bitcoin use is 2^-20.
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*/
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package gcs
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280
gcs/gcs.go
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280
gcs/gcs.go
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// Copyright (c) 2016-2017 The btcsuite developers
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// Copyright (c) 2016-2017 The Lightning Network Developers
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// Use of this source code is governed by an ISC
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// license that can be found in the LICENSE file.
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package gcs
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import (
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"fmt"
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"io"
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"sort"
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"github.com/aead/siphash"
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"github.com/kkdai/bstream"
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)
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// Inspired by https://github.com/rasky/gcs
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var (
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// ErrNTooBig signifies that the filter can't handle N items.
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ErrNTooBig = fmt.Errorf("N is too big to fit in uint32")
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// ErrPTooBig signifies that the filter can't handle `1/2**P`
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// collision probability.
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ErrPTooBig = fmt.Errorf("P is too big to fit in uint32")
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// ErrNoData signifies that an empty slice was passed.
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ErrNoData = fmt.Errorf("No data provided")
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)
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const (
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//KeySize is the size of the byte array required for key material for
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// the SipHash keyed hash function.
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KeySize = 16
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)
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// gcsFilter describes an immutable filter that can be built from
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// a set of data elements, serialized, deserialized, and queried
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// in a thread-safe manner. The serialized form is compressed as
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// a Golomb Coded Set (GCS), but does not include N or P to allow
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// the user to encode the metadata separately if necessary. The
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// hash function used is SipHash, a keyed function; the key used
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// in building the filter is required in order to match filter
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// values and is not included in the serialized form.
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type gcsFilter struct {
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n uint32
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p uint8
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modulusP uint64
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modulusNP uint64
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filterData []byte
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}
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// BuildGCSFilter builds a new GCS filter with the collision probability of
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// `1/(2**P)`, key `key`, and including every `[]byte` in `data` as a member of
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// the set.
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func BuildGCSFilter(P uint8, key [KeySize]byte,
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data [][]byte) (*gcsFilter, error) {
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// Some initial parameter checks: make sure we have data from which to
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// build the filter, and make sure our parameters will fit the hash
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// function we're using.
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if len(data) == 0 {
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return nil, ErrNoData
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}
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if len(data) > ((1 << 32) - 1) {
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return nil, ErrNTooBig
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}
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if P > 32 {
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return nil, ErrPTooBig
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}
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// Create the filter object and insert metadata.
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f := gcsFilter{
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n: uint32(len(data)),
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p: P,
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}
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f.modulusP = uint64(1 << f.p)
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f.modulusNP = uint64(f.n) * f.modulusP
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// Build the filter.
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var values uint64Slice
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b := bstream.NewBStreamWriter(0)
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// Insert the hash (modulo N*P) of each data element into a slice and
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// sort the slice.
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for _, d := range data {
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v := siphash.Sum64(d, &key) % f.modulusNP
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values = append(values, v)
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}
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sort.Sort(values)
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// Write the sorted list of values into the filter bitstream,
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// compressing it using Golomb coding.
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var value, lastValue, remainder uint64
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for _, v := range values {
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// Calculate the difference between this value and the last,
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// modulo P.
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remainder = (v - lastValue) % f.modulusP
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// Calculate the difference between this value and the last,
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// divided by P.
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value = (v - lastValue - remainder) / f.modulusP
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lastValue = v
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// Write the P multiple into the bitstream in unary; the
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// average should be around 1 (2 bits - 0b10).
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for value > 0 {
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b.WriteBit(true)
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value--
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}
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b.WriteBit(false)
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// Write the remainder as a big-endian integer with enough bits
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// to represent the appropriate collision probability.
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b.WriteBits(remainder, int(f.p))
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}
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// Copy the bitstream into the filter object and return the object.
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f.filterData = b.Bytes()
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return &f, nil
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}
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// FromBytes deserializes a GCS filter from a known N, P, and serialized
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// filter as returned by Bytes().
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func FromBytes(N uint32, P uint8, d []byte) (*gcsFilter, error) {
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// Basic sanity check.
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if P > 32 {
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return nil, ErrPTooBig
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}
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// Create the filter object and insert metadata.
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f := &gcsFilter{
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n: N,
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p: P,
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}
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f.modulusP = uint64(1 << f.p)
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f.modulusNP = uint64(f.n) * f.modulusP
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// Copy the filter.
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f.filterData = make([]byte, len(d))
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copy(f.filterData, d)
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return f, nil
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}
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// Bytes returns the serialized format of the GCS filter, which does not
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// include N or P (returned by separate methods) or the key used by SipHash.
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func (f *gcsFilter) Bytes() []byte {
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filterData := make([]byte, len(f.filterData))
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copy(filterData, f.filterData)
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return filterData
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}
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// P returns the filter's collision probability as a negative power of 2 (that
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// is, a collision probability of `1/2**20` is represented as 20).
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func (f *gcsFilter) P() uint8 {
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return f.p
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}
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// N returns the size of the data set used to build the filter.
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func (f *gcsFilter) N() uint32 {
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return f.n
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}
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// Match checks whether a []byte value is likely (within collision
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// probability) to be a member of the set represented by the filter.
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func (f *gcsFilter) Match(key [KeySize]byte, data []byte) (bool, error) {
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// Create a filter bitstream.
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filterData := f.Bytes()
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b := bstream.NewBStreamReader(filterData)
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// Hash our search term with the same parameters as the filter.
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term := siphash.Sum64(data, &key) % f.modulusNP
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// Go through the search filter and look for the desired value.
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var lastValue uint64
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for lastValue < term {
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// Read the difference between previous and new value
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// from bitstream.
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value, err := f.readFullUint64(b)
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if err != nil {
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if err == io.EOF {
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return false, nil
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}
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return false, err
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}
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// Add the previous value to it.
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value += lastValue
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if value == term {
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return true, nil
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}
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lastValue = value
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}
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return false, nil
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}
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// MatchAny returns checks whether any []byte value is likely (within
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// collision probability) to be a member of the set represented by the
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// filter faster than calling Match() for each value individually.
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func (f *gcsFilter) MatchAny(key [KeySize]byte, data [][]byte) (bool, error) {
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// Basic sanity check.
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if len(data) == 0 {
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return false, ErrNoData
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}
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// Create a filter bitstream.
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filterData := f.Bytes()
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b := bstream.NewBStreamReader(filterData)
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// Create an uncompressed filter of the search values.
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var values uint64Slice
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for _, d := range data {
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v := siphash.Sum64(d, &key) % f.modulusNP
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values = append(values, v)
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}
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sort.Sort(values)
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// Zip down the filters, comparing values until we either run out of
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// values to compare in one of the filters or we reach a matching value.
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var lastValue1, lastValue2 uint64
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lastValue2 = values[0]
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i := 1
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for lastValue1 != lastValue2 {
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// Check which filter to advance to make sure we're comparing
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// the right values.
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switch {
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case lastValue1 > lastValue2:
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// Advance filter created from search terms or return
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// false if we're at the end because nothing matched.
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if i < len(values) {
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lastValue2 = values[i]
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i++
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} else {
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return false, nil
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}
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case lastValue2 > lastValue1:
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// Advance filter we're searching or return false if
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// we're at the end because nothing matched.
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value, err := f.readFullUint64(b)
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if err != nil {
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if err == io.EOF {
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return false, nil
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}
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return false, err
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}
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lastValue1 += value
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}
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}
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// If we've made it this far, an element matched between filters so
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// we return true.
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return true, nil
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}
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// readFullUint64 reads a value represented by the sum of a unary multiple
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// of the filter's P modulus (`2**P`) and a big-endian P-bit remainder.
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func (f *gcsFilter) readFullUint64(b *bstream.BStream) (uint64, error) {
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var v uint64
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// Count the 1s until we reach a 0.
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c, err := b.ReadBit()
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if err != nil {
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return 0, err
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}
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for c == true {
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v++
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c, err = b.ReadBit()
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if err != nil {
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return 0, err
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}
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}
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// Read P bits.
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remainder, err := b.ReadBits(int(f.p))
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if err != nil {
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return 0, err
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}
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// Add the multiple and the remainder.
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v = v*f.modulusP + remainder
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return v, nil
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}
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211
gcs/gcs_test.go
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211
gcs/gcs_test.go
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// Copyright (c) 2016-2017 The btcsuite developers
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// Copyright (c) 2016-2017 The Lightning Network Developers
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// Use of this source code is governed by an ISC
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// license that can be found in the LICENSE file.
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package gcs_test
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import (
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"encoding/binary"
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"math/rand"
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"testing"
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"github.com/btcsuite/btcutil/gcs"
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)
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var (
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// No need to allocate an err variable in every test
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err error
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// Collision probability for the tests (1/2**20)
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P = uint8(20)
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// Filters are conserved between tests but we must define with an
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// interface which functions we're testing because the gcsFilter
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// type isn't exported
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filter, filter2 interface {
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Match([gcs.KeySize]byte, []byte) (bool, error)
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MatchAny([gcs.KeySize]byte, [][]byte) (bool, error)
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N() uint32
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P() uint8
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Bytes() []byte
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}
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// We need to use the same key for building and querying the filters
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key [gcs.KeySize]byte
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// List of values for building a filter
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contents = [][]byte{
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[]byte("Alex"),
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[]byte("Bob"),
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[]byte("Charlie"),
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[]byte("Dick"),
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[]byte("Ed"),
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[]byte("Frank"),
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[]byte("George"),
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[]byte("Harry"),
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[]byte("Ilya"),
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[]byte("John"),
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[]byte("Kevin"),
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[]byte("Larry"),
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[]byte("Michael"),
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[]byte("Nate"),
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[]byte("Owen"),
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[]byte("Paul"),
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[]byte("Quentin"),
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}
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// List of values for querying a filter using MatchAny()
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contents2 = [][]byte{
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[]byte("Alice"),
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[]byte("Betty"),
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[]byte("Charmaine"),
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[]byte("Donna"),
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[]byte("Edith"),
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[]byte("Faina"),
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[]byte("Georgia"),
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[]byte("Hannah"),
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[]byte("Ilsbeth"),
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[]byte("Jennifer"),
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[]byte("Kayla"),
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[]byte("Lena"),
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[]byte("Michelle"),
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[]byte("Natalie"),
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[]byte("Ophelia"),
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[]byte("Peggy"),
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[]byte("Queenie"),
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}
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)
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// TestGCSFilterBuild builds a test filter with a randomized key. For Bitcoin
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// use, deterministic filter generation is desired. Therefore, a
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// key that's derived deterministically would be required.
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func TestGCSFilterBuild(t *testing.T) {
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for i := 0; i < gcs.KeySize; i += 4 {
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binary.BigEndian.PutUint32(key[i:], rand.Uint32())
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}
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filter, err = gcs.BuildGCSFilter(P, key, contents)
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if err != nil {
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t.Fatalf("Filter build failed: %s", err.Error())
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}
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}
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// TestGCSFilterCopy deserializes and serializes a filter to create a copy.
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func TestGCSFilterCopy(t *testing.T) {
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filter2, err = gcs.FromBytes(filter.N(), P, filter.Bytes())
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if err != nil {
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t.Fatalf("Filter copy failed: %s", err.Error())
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}
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}
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// TestGCSFilterMetadata checks that the filter metadata is built and
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// copied correctly.
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func TestGCSFilterMetadata(t *testing.T) {
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if filter.P() != P {
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t.Fatal("P not correctly stored in filter metadata")
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}
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if filter.N() != uint32(len(contents)) {
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t.Fatal("N not correctly stored in filter metadata")
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}
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if filter.P() != filter2.P() {
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t.Fatal("P doesn't match between copied filters")
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}
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if filter.N() != filter2.N() {
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t.Fatal("N doesn't match between copied filters")
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}
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}
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// TestGCSFilterMatch checks that both the built and copied filters match
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// correctly, logging any false positives without failing on them.
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func TestGCSFilterMatch(t *testing.T) {
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match, err := filter.Match(key, []byte("Nate"))
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if err != nil {
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t.Fatalf("Filter match failed: %s", err.Error())
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}
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if !match {
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t.Fatal("Filter didn't match when it should have!")
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}
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match, err = filter2.Match(key, []byte("Nate"))
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if err != nil {
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t.Fatalf("Filter match failed: %s", err.Error())
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}
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if !match {
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t.Fatal("Filter didn't match when it should have!")
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}
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match, err = filter.Match(key, []byte("Quentin"))
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if err != nil {
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t.Fatalf("Filter match failed: %s", err.Error())
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}
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if !match {
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t.Fatal("Filter didn't match when it should have!")
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}
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match, err = filter2.Match(key, []byte("Quentin"))
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if err != nil {
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t.Fatalf("Filter match failed: %s", err.Error())
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}
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if !match {
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t.Fatal("Filter didn't match when it should have!")
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||||
}
|
||||
match, err = filter.Match(key, []byte("Nates"))
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match failed: %s", err.Error())
|
||||
}
|
||||
if match {
|
||||
t.Logf("False positive match, should be 1 in 2**%d!", P)
|
||||
}
|
||||
match, err = filter2.Match(key, []byte("Nates"))
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match failed: %s", err.Error())
|
||||
}
|
||||
if match {
|
||||
t.Logf("False positive match, should be 1 in 2**%d!", P)
|
||||
}
|
||||
match, err = filter.Match(key, []byte("Quentins"))
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match failed: %s", err.Error())
|
||||
}
|
||||
if match {
|
||||
t.Logf("False positive match, should be 1 in 2**%d!", P)
|
||||
}
|
||||
match, err = filter2.Match(key, []byte("Quentins"))
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match failed: %s", err.Error())
|
||||
}
|
||||
if match {
|
||||
t.Logf("False positive match, should be 1 in 2**%d!", P)
|
||||
}
|
||||
}
|
||||
|
||||
// TestGCSFilterMatchAny checks that both the built and copied filters match
|
||||
// a list correctly, logging any false positives without failing on them.
|
||||
func TestGCSFilterMatchAny(t *testing.T) {
|
||||
match, err := filter.MatchAny(key, contents2)
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match any failed: %s", err.Error())
|
||||
}
|
||||
if match {
|
||||
t.Logf("False positive match, should be 1 in 2**%d!", P)
|
||||
}
|
||||
match, err = filter2.MatchAny(key, contents2)
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match any failed: %s", err.Error())
|
||||
}
|
||||
if match {
|
||||
t.Logf("False positive match, should be 1 in 2**%d!", P)
|
||||
}
|
||||
contents2 = append(contents2, []byte("Nate"))
|
||||
match, err = filter.MatchAny(key, contents2)
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match any failed: %s", err.Error())
|
||||
}
|
||||
if !match {
|
||||
t.Fatal("Filter didn't match any when it should have!")
|
||||
}
|
||||
match, err = filter2.MatchAny(key, contents2)
|
||||
if err != nil {
|
||||
t.Fatalf("Filter match any failed: %s", err.Error())
|
||||
}
|
||||
if !match {
|
||||
t.Fatal("Filter didn't match any when it should have!")
|
||||
}
|
||||
}
|
||||
49
gcs/gcsbench_test.go
Normal file
49
gcs/gcsbench_test.go
Normal file
|
|
@ -0,0 +1,49 @@
|
|||
// Copyright (c) 2016-2017 The btcsuite developers
|
||||
// Copyright (c) 2016-2017 The Lightning Network Developers
|
||||
// Use of this source code is governed by an ISC
|
||||
// license that can be found in the LICENSE file.
|
||||
|
||||
package gcs_test
|
||||
|
||||
import (
|
||||
"encoding/binary"
|
||||
"math/rand"
|
||||
"testing"
|
||||
|
||||
"github.com/btcsuite/btcutil/gcs"
|
||||
)
|
||||
|
||||
// BenchmarkGCSFilterBuild benchmarks building a filter.
|
||||
func BenchmarkGCSFilterBuild(b *testing.B) {
|
||||
b.StopTimer()
|
||||
for i := 0; i < gcs.KeySize; i += 4 {
|
||||
binary.BigEndian.PutUint32(key[i:], rand.Uint32())
|
||||
}
|
||||
b.StartTimer()
|
||||
|
||||
for i := 0; i < b.N; i++ {
|
||||
gcs.BuildGCSFilter(P, key, contents)
|
||||
}
|
||||
}
|
||||
|
||||
// BenchmarkGCSFilterMatch benchmarks querying a filter for a single value.
|
||||
func BenchmarkGCSFilterMatch(b *testing.B) {
|
||||
b.StopTimer()
|
||||
filter, err = gcs.BuildGCSFilter(P, key, contents)
|
||||
if err != nil {
|
||||
b.Errorf("Failed to build filter")
|
||||
}
|
||||
b.StartTimer()
|
||||
|
||||
for i := 0; i < b.N; i++ {
|
||||
filter.Match(key, []byte("Nate"))
|
||||
filter.Match(key, []byte("Nates"))
|
||||
}
|
||||
}
|
||||
|
||||
// BenchmarkGCSFilterMatchAny benchmarks querying a filter for a list of values.
|
||||
func BenchmarkGCSFilterMatchAny(b *testing.B) {
|
||||
for i := 0; i < b.N; i++ {
|
||||
filter.MatchAny(key, contents2)
|
||||
}
|
||||
}
|
||||
26
gcs/uint64slice.go
Normal file
26
gcs/uint64slice.go
Normal file
|
|
@ -0,0 +1,26 @@
|
|||
// Copyright (c) 2016-2017 The btcsuite developers
|
||||
// Copyright (c) 2016-2017 The Lightning Network Developers
|
||||
// Use of this source code is governed by an ISC
|
||||
// license that can be found in the LICENSE file.
|
||||
|
||||
package gcs
|
||||
|
||||
// uint64slice is a package-local utility class that allows us to use Go's
|
||||
// sort package to sort a []uint64 by implementing sort.Interface.
|
||||
type uint64Slice []uint64
|
||||
|
||||
// Len returns the length of the slice.
|
||||
func (p uint64Slice) Len() int {
|
||||
return len(p)
|
||||
}
|
||||
|
||||
// Less returns true when the ith element is smaller than the jth element
|
||||
// of the slice, and returns false otherwise.
|
||||
func (p uint64Slice) Less(i, j int) bool {
|
||||
return p[i] < p[j]
|
||||
}
|
||||
|
||||
// Swap swaps two slice elements.
|
||||
func (p uint64Slice) Swap(i, j int) {
|
||||
p[i], p[j] = p[j], p[i]
|
||||
}
|
||||
Loading…
Reference in a new issue